{output_dir}/snakemake/sbatch
directory. snakemake_cmd.txt
contains all the snakemake command for all PCR index sub-directories. sbatch.sh
is a submission script file that can automatically submit all these commands via yap sbatch
. yap sbatch
will control the total number of jobs run in parallel on the sbatch. nohup
rsync
the whole output_dir
from the remote server back to the same location. If you rsync
to the same path, you may skip the FASTQ files because they are unchanged during mapping.