After installed conda, use conda init on your favorite shell
1
# e.g., bash or zsh
2
conda init bash
3
4
# you need to restart shell after conda init
Copied!
Add channels
1
# run these command to add bioconda into your conda channel,
2
# the order of these 3 line matters
3
conda config --add channels defaults
4
conda config --add channels bioconda
5
conda config --add channels conda-forge
Copied!
Create Environment With Required Packages
This command will create a conda environment called "mapping" and install all required packages for you. The mapping_env.yaml contains the detail about the environment, you can copy the content of that file below.
1
# conda is a bit slow, this step will take ~30 min in my server,