usage: yap demultiplex [-h] --fastq_pattern FASTQ_PATTERN --output_dir
OUTPUT_DIR --config_path CONFIG_PATH --cpu CPU
-h, --help show this help message and exit
--fastq_pattern FASTQ_PATTERN, -fq FASTQ_PATTERN
FASTQ files with wildcard to match all bcl2fastq
results, pattern with wildcard must be quoted.
--output_dir OUTPUT_DIR, -o OUTPUT_DIR
Pipeline output directory, will be created
recursively. (default: None)
--config_path CONFIG_PATH, -config CONFIG_PATH
Path to the mapping config, see 'yap default-mapping-
config' about how to generate this file. (default:
--cpu CPU, -j CPU Number of cores to use. Note that the demultiplex step
will only use at most 16 cores. (default: None)