Before Start
Installation
TECH BACKGROUND
Mapping Pipeline
Prepare
- Prepare PlateInfo & bcl2fastq SampleSheet
- Prepare Mapping Config
  - Prepare Reference Files
Demultiplex
Mapping
Mapping Form Cell-Level FASTQ Files
Summary
Mapping Metrics
- Key Mapping Metrics
- All Mapping Metrics
Generate MCDS
Pseudo-bulk
- Methylome Pseudo-bulk
Other
- FAQ
- Changelog

Powered by GitBook

On this page

Run snakemake directly
Troubleshooting

Was this helpful?

Mapping

Mapping Locally

PreviousMapping Via Sbatch NextMapping Form Cell-Level FASTQ Files

Last updated 4 years ago

Was this helpful?