Details and protocols of the technologies supported by YAP were described in our papers. Please find the corresponding references below.
The first publication of snmC-seq:
The improved version called snmC-seq2 (using V1 barcoding):
The protocol of snmC-seq3 (using V2 barcoding) is under preparation.
The snmCT-seq (and snmC2T-seq, which has NOMe treatment) preprint:
The snm3C-seq paper
Another method developed in Ren Lab called Methyl-HiC that also profiles mC and chromatin contacts in the same cell