Before Start
YAP is a full pipeline designed for raw sequencing data (BCL files and raw FASTQ files before demultiplex) generated in the Ecker Lab.
If you download our published data and want to remap using the cell-level FASTQ files, I provided a tutorial here.
YAP (Yet Another-Pipeline ) is a mapping pipeline designed for several single nucleus methyl-cytosine sequencing (snmC-seq) based technologies (see below).
- 1.Be familiar with the background of cell barcoding and the technology you use. If not, read the corresponding TECH BACKGROUND section.
- 2.
- 3.Follow the MAPPING PIPELINE section step by step.
- 4.If you have questions, first go to the FAQ page. If the problem is not solved, you can post an issue on GitHub.
- 5.This documentation is searchable.
Jingtian Zhou
Chongyuan Luo
Wei Tian
Last modified 2yr ago