YAP is a full pipeline designed for raw sequencing data (BCL files and raw FASTQ files before demultiplex) generated in the Ecker Lab.
If you download our published data and want to remap using the cell-level FASTQ files, I provided a tutorial here.
What is YAP?
YAP (Yet Another-Pipeline ) is a mapping pipeline designed for several single nucleus methyl-cytosine sequencing (snmC-seq) based technologies (see below).
It starts from demultiplexing FASTQ files and ends at generating single-cell ALLC files.