Prepare Mapping Config
Prepare a config file that contains all parameters and path to the genome reference
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Prepare a config file that contains all parameters and path to the genome reference
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In this step, you need to prepare a MappingConfig file that contains all the parameters for the mapping pipeline. Mainly, the path to the genome reference files.
All the genome reference files, .
Technology type
Barcoding version
Review and modify the MappingConfig template as you need, each parameter is explained within the template.
Remember different server needs different MappingConfig (different reference path).
mapping_config.ini file, needed for yap demultiplex
.