yap default-mapping-config -h
usage: yap default-mapping-config [-h] --mode {mct,mc} --barcode_version
{V1,V2} --bismark_ref BISMARK_REF
--genome_fasta GENOME_FASTA
[--star_ref STAR_REF] [--gtf GTF] [--nome]
-h, --help show this help message and exit
--mode {mct,mc} Library mode (default: None)
--barcode_version {V1,V2}, -v {V1,V2}, -V {V1,V2}
Barcode version, V1 for 8 random index, V2 for 384
random index (default: None)
--bismark_ref BISMARK_REF
Path to the bismark reference (default: None)
--genome_fasta GENOME_FASTA
Path to the genome fasta file (default: None)
--star_ref STAR_REF [mct only] Path to the STAR reference, required if
mode is mct (default: None)
--gtf GTF [mct only] Path to the GTF annotation file, required
if mode is mct (default: None)
--nome Does this library have NOMe treatment? (default: